Package: ggmix
Type: Package
Title: Variable Selection in Linear Mixed Models for SNP Data
Version: 0.0.2
Authors@R: c(
  person("Sahir", "Bhatnagar", email = "sahir.bhatnagar@gmail.com",
  role = c("aut", "cre"), comment = "https://sahirbhatnagar.com/"),
  person("Karim", "Oualkacha", email = "oualkacha.karim@uqam.ca",
  role = c("aut"), comment = "http://karimoualkacha.uqam.ca/"),
  person("Yi", "Yang", email = "yi.yang6@mcgill.ca",
  role = c("aut"), comment = "http://www.math.mcgill.ca/yyang/"),
  person("Celia", "Greenwood", email = "celia.greenwood@mcgill.ca",
  role = c("aut"), comment = "http://www.mcgill.ca/statisticalgenetics/")
  )
Description: Fit penalized multivariable linear mixed models with a
        single random effect to control for population structure in
        genetic association studies. The goal is to simultaneously fit
        many genetic variants at the same time, in order to select
        markers that are independently associated with the response.
        Can also handle prior annotation information, for example, rare
        variants, in the form of variable weights. For more
        information, see the website below and the accompanying paper:
        Bhatnagar et al., "Simultaneous SNP selection and adjustment
        for population structure in high dimensional prediction
        models", 2020, <DOI:10.1371/journal.pgen.1008766>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.4.0)
Imports: glmnet, methods, stats, MASS, Matrix
Suggests: RSpectra, popkin, bnpsd, testthat, covr, knitr, rmarkdown
BugReports: https://github.com/sahirbhatnagar/ggmix/issues
URL: https://github.com/sahirbhatnagar/ggmix
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Repository: https://sahirbhatnagar.r-universe.dev
Date/Publication: 2021-04-14 00:13:54 UTC
RemoteUrl: https://github.com/sahirbhatnagar/ggmix
RemoteRef: HEAD
RemoteSha: eb1c8a71ddc8f7e450dfbab68e7c562eac0ed487
NeedsCompilation: no
Packaged: 2026-06-22 09:38:28 UTC; root
Author: Sahir Bhatnagar [aut, cre] (https://sahirbhatnagar.com/),
  Karim Oualkacha [aut] (http://karimoualkacha.uqam.ca/),
  Yi Yang [aut] (http://www.math.mcgill.ca/yyang/),
  Celia Greenwood [aut] (http://www.mcgill.ca/statisticalgenetics/)
Maintainer: Sahir Bhatnagar <sahir.bhatnagar@gmail.com>