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message: 'To cite package "manhattanly" in publications use:'
type: software
license: MIT
title: 'manhattanly: Interactive Q-Q and Manhattan Plots Using ''plotly.js'''
version: 0.3.0
doi: 10.32614/CRAN.package.manhattanly
identifiers:
- type: url
  value: https://sahirbhatnagar.com/manhattanly/
abstract: Create interactive manhattan, Q-Q and volcano plots that are usable from
  the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents,
  and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag
  a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing
  results from high-dimensional data analysis such as a (epi)genome wide association
  study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on
  a scatter plot against their genomic position. Manhattan plots are used for visualizing
  potential regions of interest in the genome that are associated with a phenotype.
  Interactive manhattan plots allow the inspection of specific value (e.g. rs number
  or gene name) by hovering the mouse over a cell, as well as zooming into a region
  of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area.
  This work is based on the 'qqman' package and the 'plotly.js' engine. It produces
  similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman'
  package, with the advantage of including extra annotation information and interactive
  web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly'
  graphs (and the data behind them) can be viewed and modified in a web browser.
authors:
- family-names: Bhatnagar
  given-names: Sahir
  email: sahir.bhatnagar@gmail.com
  website: http://sahirbhatnagar.com/
repository: https://sahirbhatnagar.r-universe.dev
repository-code: https://github.com/sahirbhatnagar/manhattanly
commit: e07618267b2a762145b00d6d39b14e930756c3ed
url: https://github.com/sahirbhatnagar/manhattanly/
date-released: '2021-04-06'
contact:
- family-names: Bhatnagar
  given-names: Sahir
  email: sahir.bhatnagar@gmail.com
  website: http://sahirbhatnagar.com/