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Plot Hazards and Hazard Ratios2 years ago
Introduction | Hazard Function | One binary predictor, no interactions | Hazard functions on separate plots | Hazard functions on same plots | ggplot2 version | One binary predictor with interaction | One continuous predictor with interaction | One continuous predictor with interaction and several other predictors | Hazard Ratio | Manson Trial (eprchd) | Save results | Session information
Time-Varying Covariates3 years ago
References
Population Time Plots5 years ago
Overview | Load Required Packages | European Randomized Study of Prostate Cancer Screening Data | Exposure Stratified Population Time Plot | Plotting the base series | Stem Cell Data | Plotting the follow-up times for each observation | Plot the Case Series | Plot the Base Series | Plot the Competing event | Stratified by Disease | Change color points and legend labels | Veteran Data | Stratified by treatment population time plot | Stanford Heart Transplant Data | NCCTG Lung Cancer Data | Stratified by gender | Simulated Data Example | Simulate the data | Population Time Plot | Stratified by Binary Covariate z | Session information
Competing risk analysis5 years ago
Data | Population-time plots | Analysis | Absolute risk | Session information | References
Introduction to casebase sampling5 years ago
Methodological details | Analysis of the veteran dataset | Cumulative Incidence Curves | Session information | References
Customizing Population Time Plots6 years ago
Setup | Introduction | The .params arguments | Change the Facet Labels | Changing the Plot Aesthetics | Change only the point colors | Change Point Color and Legend Labels | Session information
Plot Cumulative Incidence and Survival Curves6 years ago
Introduction | Analysis of the brcancer dataset | Plotting Cumulative Incidence Curves | Using graphics::matplot | Survival Curves | Other families | glmnet | gam | Session information
Introduction to the ggmix package6 years ago
Model | Installation | Quick Start | Fit the linear mixed model with Lasso Penalty | Find the Optimal Value of the Tuning Parameter | Get Coefficients Corresponding to Optimal Model | Diagnostic Plots | Observed vs. Predicted Response | QQ-plots for Residuals and Random Effects | Tukey-Anscombe Plot
Alternative Inputs for Population Structure6 years ago
The kinship argument | The U and D arguments | The K argument
Incorporating Prior Annotation Weights6 years ago
Setting the Penalty Factor Argument